GFI1B By gene

Chromosome: chr9

Position: 135 820 932 - 135 867 083

Width: 46 152

Strand: +

Gene Type: protein_coding

Imprinting Status: no_imprinting

Cancer Gene: no

Role in Cancer: -

TAD region: 135 280 001 - 135 920 000

GeneHancer

GH09J132885 - (chr9:135759988-135765786)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
somatic SNVs
sample_ID cis_activated_gene n_within_genehancer
ICGC_MB137 FALSE 1

GH09J132890 - (chr9:135766388-135766787)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5

GH09J132896 - (chr9:135771498-135773092)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5

GH09J132908 - (chr9:135783788-135784587)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5

GH09J132944 - (chr9:135818187-135821188)

Promoter/Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5

GH09J132977 - (chr9:135852465-135854406)

Promoter/Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
somatic SNVs
sample_ID cis_activated_gene n_within_genehancer
ICGC_MB137 FALSE 1

GH09J132981 - (chr9:135857431-135863092)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
somatic SNVs
sample_ID cis_activated_gene n_within_genehancer
ICGC_MB45 FALSE 1

ChIP-Seq

chr9:135404429-135410569

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 5
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
somatic SNVs
sample_ID cis_activated_gene n_within_chipseq
ICGC_MB108 FALSE 1

chr9:135444905-135541563

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG FALSE 2
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 2
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG TRUE 3
somatic SNVs
sample_ID cis_activated_gene n_within_chipseq
ICGC_MB110 FALSE 1
ICGC_MB233 FALSE 1
ICGC_MB237 FALSE 1

chr9:135672353-135676701

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB247 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 4
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB9 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5

chr9:135307682-135312154

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1

chr9:135607521-135610146

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
somatic SNVs
sample_ID cis_activated_gene n_within_chipseq
ICGC_MB110 FALSE 1

chr9:135619580-135622285

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1

chr9:135804714-135808809

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB175 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 4
ICGC_MB165 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB230 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH TRUE 1
ICGC_MB70 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1

chr9:131886411-131891784

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB70 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN TRUE 1

ICGC_MB247cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB247 group_3 13.3 4 4 0 0.00469385084298183,0.000165866036467018,0.00469385084298183,3.06189454325645e-08 0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid 0.0001028 0.5 0.0125967 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 0 0 0 0
somatic SNVs/InDels 1 0 0 1
relevant somatic SNVs/InDels 1 0 - -
all Mutations 2 1 - 2
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr9 135485069 chr9 135872032 INV INV
Somatic SNVs
snv_chrom snv_pos ref alt
chr9 135591141 T A

ICGC_MB9cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB9 group_3 6.46 10 10 0 0.000165866036466994,0.000920318066595282,0.000373479238582212,0.00117493110878341,6.55285117623248e-05,9.41288189490847e-05,0.000165866036466994,0.000373479238582212,1.00551903474052e-14,2.05820534394824e-10 0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 5.9e-06 0.5 0.0003917 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 6 6 6 6
CNAs 6 6 6 6
somatic SNVs/InDels 1 0 0 1
relevant somatic SNVs/InDels 1 0 - -
all Mutations 13 12 - 13
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr9 135469280 chr9 135545734 INV INV
chr9 135469284 chr9 135545734 INV INV
chr9 135482524 chr9 135876029 DUP NORMAL
chr9 135482763 chr9 135876029 TRA NORMAL
chr9 135577312 chr9 135879940 INV INV
chr9 135577519 chr9 135879940 INV INV
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr9 135469281 135469284 0.000000 HomoDel NA
chr9 135469285 135482524 1.170296 DEL NA
chr9 135482525 135482763 2.850959 DEL NA
chr9 135545735 135577312 0.596952 DEL NA
chr9 135577313 135577519 0.000000 HomoDel NA
chr9 135876030 135879940 2.518763 DEL NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr9 135581358 C T

ICGC_MB230cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB230 group_4 11.51 2 2 0 1.64889410760754e-07,2.05820534394824e-10 0.5,0.5 diploid,diploid 0 0.5 1.3e-06 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 1 1 1 1
somatic SNVs/InDels 0 0 0 0
relevant somatic SNVs/InDels 0 0 - -
all Mutations 2 2 - 2
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr9 135489513 chr9 135849530 DEL NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr9 135489514 135849530 -0.8024467 HomoDel NA

ICGC_MB70cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB70 group_4 21.13 2 2 2 0,0 0.618020541549953,0.520744680851064 cnv,cnv 0 0.5693826 0 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 3 3 3 3
somatic SNVs/InDels 0 0 0 0
relevant somatic SNVs/InDels 0 0 - -
all Mutations 4 4 - 4
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr9 135470241 chr9 135887872 DUP NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr9 135470242 135887872 6.357921 DUP NA
chr9 135887873 140779965 5.273185 DUP NA
chr9 132509971 135470241 5.195489 DUP NA

ICGC_MB110SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB110 group_4 0.01 0 0 0 NA NA NA FALSE FALSE NA FALSE NA ref_filtered 0.9256152 FALSE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 3 3 3 3
CNAs 4 4 4 4
somatic SNVs/InDels 2 0 2 2
relevant somatic SNVs/InDels 0 0 - -
all Mutations 9 7 - 9
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr9 135440336 chr9 135455421 DUP NORMAL
chr9 135440341 chr9 135455421 DUP NORMAL
chr9 135454120 chr9 135712136 DUP NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr9 135440337 135440341 0.000000 HomoDel NA
chr9 135440342 135454120 4.740415 DUP NA
chr9 135454121 135455421 4.977455 DUP NA
chr9 135455422 135712136 5.062247 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr9 135454517 C T
chr9 135608341 C G

ICGC_MB165SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB165 group_4 0.04 0 0 0 NA NA NA FALSE FALSE NA FALSE NA ref_filtered 0.2703321 FALSE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 0 0 0 0
CNAs 1 1 1 1
somatic SNVs/InDels 0 0 0 0
relevant somatic SNVs/InDels 0 0 - -
all Mutations 1 1 - 1
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr9 135340069 135359998 4.990848 DUP NA

ICGC_MB175SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB175 group_4 0.07 0 0 0 NA NA NA FALSE FALSE NA FALSE NA ref_filtered 0.0060756 TRUE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 0 0 0 0
somatic SNVs/InDels 0 0 0 0
relevant somatic SNVs/InDels 0 0 - -
all Mutations 1 1 - 1
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr9 135894809 chr9 135896575 DEL NORMAL