PRDM6 By gene

Chromosome: chr5

Position: 122 424 816 - 122 529 960

Width: 105 145

Strand: +

Gene Type: protein_coding

Imprinting Status: no_imprinting

Cancer Gene: no

Role in Cancer: -

TAD region: 121 360 001 - 122 920 000

GeneHancer

GH05J123087 - (chr5:122423495-122428095)

Promoter/Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 3
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB243 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB243 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
somatic SNVs
sample_ID cis_activated_gene n_within_genehancer
ICGC_MB19 FALSE 1

GH05J123115 - (chr5:122451619-122453494)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 3
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB243 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB243 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1

GH05J123119 - (chr5:122454855-122455750)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 3
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB243 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB243 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1

GH05J123124 - (chr5:122460582-122462388)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 3
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB243 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB243 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1

GH05J123138 - (chr5:122474496-122474695)

Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 3
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB243 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB243 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1

GH05J123421 - (chr5:122756880-122760520)

Promoter/Enhancer - within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 2
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 3
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB243 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB243 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
somatic SNVs
sample_ID cis_activated_gene n_within_genehancer
ICGC_MB101 FALSE 1

ChIP-Seq

chr5:121645676-121654259

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 2
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 5
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 3
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 6
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 4
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
somatic SNVs
sample_ID cis_activated_gene n_within_chipseq
ICGC_MB91 TRUE 1

chr5:121696880-121713380

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 4
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1

chr5:121717462-121764251

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 3
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 4
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_REG TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1

chr5:121764311-121775413

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 3
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 4
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
somatic SNVs
sample_ID cis_activated_gene n_within_chipseq
ICGC_MB110 TRUE 1
ICGC_MB177 FALSE 1

chr5:121786036-121796571

within gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 3
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->OTHER_CHROM TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB65 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB70 ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH<->OTHER_CHROM FALSE 1
ICGC_MB70 OTHER_CHROM<->ON_SHARED_CHROM__IN_SHARED_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH<->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN FALSE 1
ICGC_MB108 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB108 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH FALSE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 4
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB110 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB129 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 2
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB213 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB228 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB6 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB64 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1
ICGC_MB71 ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE->ON_SHARED_CHROM__OUTSIDE_TAD__HIGH_OF_BOTH FALSE 1
ICGC_MB71 ON_SHARED_CHROM__OUTSIDE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__IN_GENE FALSE 1
ICGC_MB91 ON_SHARED_CHROM__IN_SHARED_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_SHARED_TAD__BETWEEN TRUE 1

chr2:143942252-143956935

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144037127-144043126

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144043620-144049176

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144063556-144065177

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144065619-144073751

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144090736-144096299

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144097411-144128672

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144130491-144143237

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144145041-144152490

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144154513-144162742

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144185230-144195834

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144378586-144384830

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144436004-144446601

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144480565-144485343

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144596195-144601992

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144690188-144700497

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144701737-144716095

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:144759227-144767477

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__HIGH_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr2:145186751-145190899

outside gene TAD

SVs
sample_ID position_category_SV cis_activated_gene n
ICGC_MB70 ON_REG_CHROM__IN_REG_TAD__LOW_OF_REG<->ON_GENE_CHROM__IN_GENE_TAD__HIGH_OF_GENE FALSE 1

chr5:170177023-170180247

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB243 ON_SHARED_CHROM__IN_GENE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_REG_TAD__HIGH_OF_BOTH FALSE 1

chr5:170587125-170591291

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB243 ON_SHARED_CHROM__IN_GENE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_REG_TAD__BETWEEN FALSE 1

chr5:170627611-170630405

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB243 ON_SHARED_CHROM__IN_GENE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_REG_TAD__BETWEEN FALSE 1

chr5:170733245-170744308

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB243 ON_SHARED_CHROM__IN_GENE_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_REG_TAD__BETWEEN FALSE 1

chr5:82959522-82963303

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83008525-83013767

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83016424-83019331

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83567854-83572876

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83602372-83604652

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83604888-83608793

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__BETWEEN->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83642494-83647569

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83650447-83653816

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

chr5:83672558-83684272

outside gene TAD

CNAs
sample_ID position_category_CNA cis_activated_gene n
ICGC_MB108 ON_SHARED_CHROM__IN_REG_TAD__LOW_OF_BOTH->ON_SHARED_CHROM__IN_GENE_TAD__BETWEEN FALSE 1

ICGC_MB110cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB110 group_4 26.26 113 113 0 6.43386875739801e-06,1.03495820087763e-05,1.68048355269578e-05,0.000201815233596249,2.53594786088262e-06,5.66843018600203e-08,2.76164622581266e-05,6.55285117608915e-05,4.60862470085378e-05,1.03495820087763e-05,6.55285117608915e-05,0.000463360219535618,0.000165866036467018,0.000302710383444638,0.00117493110878587,2.76164622581266e-05,0.000373479238582212,7.8428873757887e-05,1.68048355269578e-05,0.000165866036467018,5.4889712632732e-05,0.000201815233596051,0.00200300959693676,0.000373479238583235,0.000246596473014317,2.95748092158313e-06,0.000726878162158246,0.000201815233596249,0.00151390180759453,0.000302710383444327,0.000136849642424174,9.41288189520058e-05,6.55285117608915e-05,0.00346462695867154,0.00151390180759453,0.000165866036466994,3.87785921261887e-05,0.000302710383444327,0.000373479238582212,0.000246596473014103,0.000920318066595282,0.000201815233596051,0.000302710383444327,3.87785921261887e-05,4.6086247009965e-05,0.000513203920402398,0.000920318066595282,0.000165866036466994,0.000165866036466994,0.00117493110878341,0.00151390180759453,0.00116153916070679,0.00117493110878341,0.00057839677433564,0.00057839677433564,0.000726878162159953,0.000726878162159953,0.00346462695867154,0.00259599836671773,0.000165866036466994,7.531821855919e-06,5.4889712632732e-05,0.00469385084298422,1.68048355261958e-05,1.68048355261958e-05,0.00469385084298422,0.00057839677433564,2.3366518090816e-05,0.000129362804442538,0.000129362804442538,0.000113311470123314,0.000201815233596051,0.000416755128576245,2.3366518090816e-05,4.70565954580927e-06,0.000136849642421729,0.000373479238582212,0.000136849642421729,9.41288189520058e-05,0.000920318066595282,0.000726878162159953,0.00259599836671773,0.000920318066595282,0.000113311470123314,4.6086247009965e-05,0.000920318066595282,0.000201815233596051,1.98016088328684e-05,0.000136849642421729,0.000373479238582212,0.000920318066595282,0.000920318066595282,0.00646981300133728,0.000201815233596051,0.00469385084298183,0.000726878162159953,0.000726878162159953,0.00197094246029437,0.00646981300133728,0.00259599836671773,0.00469385084298422,0.00197094246029437,0.00469385084298422,0.00197094246029437,0.00469385084298422,0.00469385084298422,0.000920318066595282,0.00646981300133728,0.000136849642424174,0.000165866036466994,3.87785921261887e-05,0.00057839677433564,0.00057839677433564 0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.447368421052632,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.46,0.5,0.5,0.5,0.5,0.5,0.423076923076923,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.46875,0.46875,0.5,0.5,0.461538461538462,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 0.000249 0.4976061 0.0153105 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 5 5 5 5
CNAs 6 6 6 6
somatic SNVs/InDels 3 0 1 3
relevant somatic SNVs/InDels 2 0 - -
all Mutations 14 11 - 14
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121695472 chr5 121878290 DUP NORMAL
chr5 121696071 chr5 121880193 INV INV
chr5 121697572 chr5 121878089 INV INV
chr5 121876919 chr5 121878320 DEL NORMAL
chr5 121878290 chr5 121697572 INV INV
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121695473 121696071 5.062247 DUP NA
chr5 121697573 121876919 5.062247 DUP NA
chr5 121876920 121878089 5.062247 DUP NA
chr5 121878090 121878290 5.299089 DUP NA
chr5 121878291 121878320 0.000000 HomoDel NA
chr5 121878321 121880193 5.176485 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121770553 T C
chr5 122755162 C T
chr5 121523060 CTA C

ICGC_MB129cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB129 group_4 12.34 4 4 0 8.7255078608175e-07,0.00646981300133728,0.00346462695867096,0.00646981300133321 0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid 0.0005964 0.5 0.000906 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 2 2 2 2
CNAs 3 3 3 3
somatic SNVs/InDels 2 0 0 2
relevant somatic SNVs/InDels 2 0 - -
all Mutations 7 5 - 7
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121641569 chr5 121738419 DUP NORMAL
chr5 121643177 chr5 121694911 DEL NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121643178 121694911 4.768962 DUP NA
chr5 121694912 121738419 6.020691 DUP NA
chr5 121738420 121919983 4.966824 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121695392 T A
chr5 121859892 G A

ICGC_MB213cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB213 group_4 74.73 102 102 0 1.61453007147019e-16,7.63386248176641e-15,0,2.71224364147639e-16,6.21072898775295e-15,0,9.67841933535587e-15,5.4170812088561e-08,0.00751752494067602,4.52829264213091e-13,0,6.06791420048704e-14,6.77831782500412e-15,3.6164533995018e-14,0,2.06700844404767e-13,2.06700844404767e-13,6.64248310068153e-10,1.77290638951744e-15,1.26068889418828e-14,7.37001779304318e-11,5.86548410183631e-15,2.19160516324783e-11,5.4889712632732e-05,1.50612366572029e-06,2.23338441769607e-07,9.03372088161433e-16,3.51789699560895e-07,2.93600081136331e-15,1.47648211281358e-13,3.73051432718291e-13,1.23583312806515e-14,0,0,1.95295918263632e-15,7.65671557218884e-14,6.16388272749916e-12,2.14184110341838e-14,1.36209436433975e-08,1.26876128585244e-11,0,0,0.000155953241408729,1.40720922364238e-08,1.22956386874064e-15,8.85974612313779e-12,0,3.41640935860982e-16,1.13541721643218e-13,8.7856772284754e-09,4.27896140038108e-12,9.42968543555922e-15,4.39885328088273e-09,3.00070076570246e-14,0,3.15065104868141e-15,9.70155021698263e-16,1.47648211281358e-13,1.52768569159808e-15,0,9.16154180505244e-16,5.66843009840385e-08,0,2.08778796556596e-09,3.06189458178439e-08,4.60862470085378e-05,1.03495820087763e-05,1.86688087937789e-06,1.37004669444357e-05,1.61412674377258e-05,1.03495820087763e-05,6.27880544424256e-05,0.000136849642424174,4.0926787900558e-07,3.57322869615482e-08,2.95748092158313e-06,0.000373479238583235,2.17543254054847e-06,8.7255078608175e-07,8.7255078608175e-07,4.02844489286919e-06,1.68048355261958e-05,1.40720922364238e-08,3.02371881976778e-07,4.09267882545399e-07,5.5003357652079e-06,1.86688087937789e-06,2.76164622581266e-05,6.55285117608915e-05,2.17543254054847e-06,2.62286173991782e-08,7.17607974981422e-06,3.51789699547122e-07,2.88438005377383e-10,1.01548085454005e-06,2.53594786088262e-06,0,1.50029509163674e-15,0,8.85963305664399e-12,1.73970251159843e-13,4.81241530484384e-16 0.5,0.5,0.494219653179191,0.5,0.49672131147541,0.496894409937888,0.5,0.476470588235294,0.363636363636364,0.5,0.5,0.5,0.49537037037037,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.492125984251969,0.5,0.46875,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.494764397905759,0.5,0.5,0.5,0.5,0.482352941176471,0.48876404494382,0.5,0.494475138121547,0.494475138121547,0.467741935483871,0.5,0.483695652173913,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.489583333333333,0.5,0.5,0.5,0.5,0.5,0.495412844036697,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.477777777777778,0.477272727272727,0.5,0.472222222222222,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.479591836734694,0.5,0.5,0.5,0.5,0.498538011695906,0.5,0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 0 0.4958908 0 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 3 3 3 3
CNAs 4 4 4 4
somatic SNVs/InDels 2 0 0 2
relevant somatic SNVs/InDels 2 0 - -
all Mutations 9 7 - 9
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121660424 chr17 80733727 TRA NORMAL
chr5 121697855 chr5 121858807 DUP NORMAL
chr5 121891061 chr5 121845374 INV INV
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121660425 121697855 2.230727 DUP NA
chr5 121697856 121845374 2.789352 DUP NA
chr5 121845375 121858807 2.774456 DUP NA
chr5 121858808 121891061 2.230727 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121832672 G C
chr5 122359310 G GT

ICGC_MB228cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB228 group_4 38.8 114 113 0 2.30892209639935e-07,2.50107053109422e-07,5.60663256553474e-08,3.26716843796069e-07,1.48971592014716e-08,1.021914336508e-07,1.38555301717961e-09,1.15541431481734e-09,1.86417925384113e-08,3.87967187303406e-07,2.126445240475e-06,5.37927369653101e-06,1.16402423769101e-05,0.00960566911231775,7.52537015969723e-05,5.86207101178111e-05,0.000339881299515771,3.01804997877239e-08,1.73614485756779e-06,1.37618365199781e-06,1.50612366572029e-06,5.76297482947704e-06,8.86061733134795e-05,0.000135572425169188,3.85922669137649e-06,5.331689776997e-07,3.67410840264836e-06,2.32778916521067e-06,1.63292250457849e-08,1.11486704656605e-08,0.000106829987437137,9.39668250203065e-06,4.29346441152545e-07,6.95429888556694e-05,0.00257331186398907,0.00333410416962932,8.47446907397829e-06,1.42562460742238e-06,1.98167579180397e-05,7.41736916262109e-06,1.88968029855676e-05,2.22555540718538e-05,5.96396597380532e-07,3.26902067240741e-05,6.53275240886168e-07,6.32874154434558e-05,3.23615593034767e-06,2.34079932875793e-05,0.000730900822737467,2.56403615542917e-06,8.68936162424161e-07,1.02236031790648e-06,0.00576024225703482,8.85677110425298e-07,7.24747001568381e-08,1.14416724932819e-06,0.000718983763426458,4.52939384413203e-07,1.20507378685233e-06,6.35397561054661e-05,2.58317670922187e-07,2.56403615542917e-06,1.41648437622903e-07,1.98542479334295e-05,4.9277652177028e-06,1.92839237684198e-08,1.06043058401525e-07,2.26618467023065e-07,1.90372773119201e-05,1.90372773119201e-05,8.53587410186223e-06,5.24748315113076e-06,3.27632796249682e-05,0.000201815233596249,0.0060381616647261,0.0850241168701457,0.00259599836671938,0.00469385084298183,0.0104086591350188,0.000464809576627793,0.00155820676231466,0.0121533256186189,0.000159580765348516,0.000113311470122149,0.000182781754539627,0.00193747274491532,0.00057839677433564,0.000237410569764963,2.65760400578802e-05,0.000759708739698995,0.00365756116276801,0.000416755128578411,7.84288737586478e-05,0.00346462695867096,0.00784360642645446,3.73019380693388e-05,0.000231730177831848,0.00124123932488638,3.27632796249042e-05,0.0015712046819309,0.000937399694009098,7.17607974981422e-06,2.99027702272679e-08,1.70427144460461e-06,1.64430035718339e-05,2.88544664683726e-16,3.8215691009515e-15,0,2.3038289278804e-14,1.52034931580473e-15,3.42919054152478e-15,0,0,2.0527232201472e-15 0.485915492957746,0.4625,0.420353982300885,0.442528735632184,0.478494623655914,0.431372549019608,0.432835820895522,0.433333333333333,0.46875,0.425531914893617,0.394736842105263,0.464285714285714,0.478260869565217,0.357142857142857,0.433333333333333,0.42156862745098,0.462962962962963,0.488095238095238,0.482758620689655,0.5,0.46875,0.438461538461538,0.385245901639344,0.363636363636364,0.421052631578947,0.44047619047619,0.397727272727273,0.408045977011494,0.46039603960396,0.439130434782609,0.430232558139535,0.435483870967742,0.485074626865672,0.42,0.444444444444444,0.441176470588235,0.425373134328358,0.391089108910891,0.458333333333333,0.416666666666667,0.384615384615385,0.383116883116883,0.409090909090909,0.395522388059702,0.459459459459459,0.434782608695652,0.453125,0.457446808510638,0.378048780487805,0.442857142857143,0.438271604938272,0.4375,0.433333333333333,0.421348314606742,0.456521739130435,0.446666666666667,0.366666666666667,0.441176470588235,0.412087912087912,0.398305084745763,0.413461538461538,0.442857142857143,0.5,0.409090909090909,0.376288659793814,0.444444444444444,0.486842105263158,0.473684210526316,0.476744186046512,0.476744186046512,0.448275862068966,0.450819672131148,0.455555555555556,0.5,0.394736842105263,0.269230769230769,0.5,0.5,0.423076923076923,0.414285714285714,0.364864864864865,0.314814814814815,0.444444444444444,0.5,0.425,0.375,0.5,0.406976744186047,0.475609756097561,0.428571428571429,0.404761904761905,0.461538461538462,0.5,0.5,0.388888888888889,0.474358974358974,0.441176470588235,0.452380952380952,0.455555555555556,0.45,0.425925925925926,0.479591836734694,0.429203539823009,0.455882352941176,0.444444444444444,0.423482849604222,0.413793103448276,0.406906906906907,0.410714285714286,0.436708860759494,0.425925925925926,0.430174563591022,0.416666666666667,0.441896024464832 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 0 0.4354991 0 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 2 2 2 2
somatic SNVs/InDels 3 0 0 3
relevant somatic SNVs/InDels 3 0 - -
all Mutations 6 3 - 6
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121680209 chr5 121886580 DUP NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121680210 121886580 9.081897 DUP NA
chr5 121886581 122038769 6.869278 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121690573 T C
chr5 122103739 G GT
chr5 122858420 C CT

ICGC_MB64cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB64 group_4 51.84 102 102 0 6.01096420531686e-10,0.000920318066595114,0.00151390180759558,5.5003357652079e-06,1.86688087916691e-06,0.000920318066595114,5.5003357652079e-06,1.98016088328684e-05,8.82480893669987e-06,5.2688682029354e-05,4.6086247009965e-05,1.21503770044868e-05,7.8428873757887e-05,0.00576024225703482,0.00117493110878341,0.00197094246029437,0.000920318066595114,0.00646981300133728,0.00646981300133728,0.00117493110878341,0.00151390180759453,0.000726878162159953,0.00197094246029321,0.000246596473014317,0.00469385084298422,0.00151390180759558,3.73019380693388e-05,7.84288737586478e-05,3.26949009420297e-05,3.26949009420297e-05,6.55285117623248e-05,0.000463360219535432,0.00259599836671773,0.00469385084298183,0.00124123932488536,3.73019380693388e-05,0.0142696297461614,0.00646981300133728,2.76164622581266e-05,5.48897126330928e-05,0.000165866036467018,7.8428873757887e-05,0.000165866036467018,0.00469385084298422,0.000578396774336104,0.000246596473014317,0.000373479238583235,4.02844489286919e-06,0.000920318066595282,0.000920318066595282,0.00259599836671938,0.00257331186398907,1.16402423769101e-05,0.000113311470122149,0.000107593717678853,4.60862470085378e-05,7.53182185543085e-06,2.95748092158313e-06,1.98016088327842e-05,0.000201815233596249,9.41288189490847e-05,0.000201815233596249,7.84288737586478e-05,0.00259599836671773,0.00117493110878587,9.41288189520058e-05,0.00200300959693621,0.000726878162158246,0.00117493110878587,0.00469385084298422,0.000373479238582212,0.000201815233596051,0.00197094246029437,0.00197094246029437,0.00197094246029437,0.00151390180759453,0.00576024225703482,0.000165866036466994,0.000302710383444327,0.00117493110878341,0.00346462695867096,0.00197094246029437,0.00346462695867154,0.00646981300133728,0.00151390180759453,0.00259599836671773,0.00346462695867154,0.00117493110878341,0.00117493110878341,0.0180750425874892,0.00151390180759453,0.000726878162159953,1.21503770044868e-05,0.000373479238582212,0.0015712046819309,6.55285117623248e-05,7.99777282023818e-16,7.81360695278353e-15,0,0,1.07262246183961e-15,2.38449706901433e-15 0.490740740740741,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.472972972972973,0.5,0.5,0.5,0.433333333333333,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.474358974358974,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.452380952380952,0.474358974358974,0.416666666666667,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.444444444444444,0.478260869565217,0.5,0.46969696969697,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.447368421052632,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.433333333333333,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.366666666666667,0.5,0.5,0.5,0.5,0.45,0.5,0.498058252427184,0.5,0.490234375,0.491228070175439,0.492987377279102,0.490074441687345 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 0 0.4928154 0 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 1 1 1 1
somatic SNVs/InDels 0 0 0 0
relevant somatic SNVs/InDels 0 0 - -
all Mutations 2 2 - 2
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121694361 chr5 121694864 INV INV
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121690120 121959969 2.79037 DUP NA

ICGC_MB91cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB91 group_4 46.43 121 121 0 3.44616345555676e-14,0.00197094246029437,1.68048355261958e-05,9.41288189520058e-05,4.6086247009965e-05,0.000201815233596051,0.00259599836671773,5.4889712632732e-05,7.8428873757887e-05,5.53925246483396e-07,0.000113311470123314,3.26949009423215e-05,1.03495820087122e-05,3.45074626792221e-06,6.55285117623248e-05,0.00117493110878341,0.00117493110878341,1.21503770044868e-05,0.000920318066595282,8.82480893669987e-06,0.000165866036466994,6.43386875804047e-06,0.00057839677433564,5.4889712632732e-05,5.4889712632732e-05,0.00151390180759453,1.21503770044868e-05,5.4889712632732e-05,8.82480893669987e-06,0.000132884161139162,0.000463360219535618,0.00469385084298422,0.000201815233596051,0.00057839677433564,0.000920318066595114,0.00151390180759453,7.53182185543085e-06,3.02371881976778e-07,0.000201815233596249,0.000463360219535618,4.60862470085378e-05,3.26949009420297e-05,4.42950062975388e-05,1.68048355269578e-05,0.000113311470123314,0.000113311470123314,5.48897126330928e-05,0.000136849642424174,9.41288189490847e-05,3.26949009420297e-05,0.000463360219535432,0.00259599836671773,1.98016088328684e-05,7.8428873757887e-05,7.8428873757887e-05,0.00117493110878341,0.00333410416962932,0.000463360219535432,5.5003357652079e-06,8.82480893669987e-06,0.000201815233596249,0.000463360219535432,1.42805848025102e-05,0.00151390180759558,7.84288737586478e-05,9.41288189490847e-05,5.48897126330928e-05,0.000165866036467018,9.41288189490847e-05,2.3366518090816e-05,9.41288189490847e-05,0.000113311470122149,5.48897126330928e-05,0.00180842433381716,0.000302710383444327,0.00346462695867154,0.000726878162158246,0.000113311470122149,7.84288737586478e-05,0.000578396774336104,0.00117493110878587,4.60862470085378e-05,9.41288189490847e-05,0.000463360219535432,0.00259599836671938,0.000201815233596249,0.000201815233596249,0.0104086591350188,0.00151390180759453,0.00346462695867154,0.00259599836671773,0.000165866036467018,0.000463360219535432,0.00197094246029437,0.00197094246029437,0.00646981300133321,3.0798050095623e-11,0.00259599836671773,0.00197094246029437,0.00646981300133321,7.8428873757887e-05,0.000201815233596249,0.00469385084298183,0.000302710383444638,0.000463360219535432,0.00646981300133728,3.49483870295509e-15,0.000578396774336104,0.00197094246029321,1.86688087916691e-06,0.00576024225703482,1.81172112875697e-11,1.59818549837507e-08,1.51549228330359e-11,6.16714168742253e-12,1.60262969930784e-06,1.01548085454005e-06,2.23338441769607e-07,1.4098665923807e-12,4.0926787900558e-07,2.08778796556596e-09 0.49375,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.445945945945946,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.473684210526316,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.441176470588235,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.416666666666667,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.423076923076923,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.494318181818182,0.5,0.5,0.5,0.433333333333333,0.5,0.488636363636364,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 4.43e-05 0.4967817 0.0065391 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 2 2 2 2
CNAs 1 1 1 1
somatic SNVs/InDels 6 0 1 6
relevant somatic SNVs/InDels 6 0 - -
all Mutations 9 3 - 9
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121649389 chr5 121859642 DUP NORMAL
chr5 121649612 chr5 121859642 TRA NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121649613 121859642 6.257754 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121380127 C G
chr5 121650484 T A
chr5 121666096 G A
chr5 121677376 T A
chr5 121687100 C A
chr5 122919221 A ATT

ICGC_MB6cis-activatedSVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB6 group_4 11.3 11 11 0 0.00117493110878341,4.6086247009965e-05,4.02844489252164e-06,0.00346462695867096,1.03495820087763e-05,0.000463360219535432,0.000726878162159953,0.00346462695867096,0.00197094246029321,0.00469385084298183,9.41288189490847e-05 0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5 diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid,diploid 0.0003439 0.5 0.0203136 TRUE TRUE TRUE FALSE TRUE ref_filtered 0 TRUE TRUE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 1 1 1 1
CNAs 1 1 1 1
somatic SNVs/InDels 1 0 0 1
relevant somatic SNVs/InDels 0 0 - -
all Mutations 3 2 - 3
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121652903 chr5 121968156 DUP NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121652904 121968156 5.103903 DUP NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 122244709 C CT

ICGC_MB243SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB243 SHH 0.15 0 0 0 NA NA NA FALSE FALSE NA FALSE NA ref_filtered 0.4665913 FALSE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 0 0 0 0
CNAs 2 2 1 2
somatic SNVs/InDels 1 0 0 1
relevant somatic SNVs/InDels 0 0 - -
all Mutations 3 2 - 3
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121370032 170260472 3.223564 DEL NA
chr5 120899999 121370032 3.068848 DEL NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 122835771 CTG C

ICGC_MB108SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB108 group_4 76.96 0 0 0 NA NA NA FALSE TRUE NA FALSE NA ref_filtered 0 TRUE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 2 2 2 2
CNAs 5 5 5 5
somatic SNVs/InDels 7 0 0 7
relevant somatic SNVs/InDels 0 0 - -
all Mutations 14 7 - 14
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121696031 chr5 121928366 DUP NORMAL
chr5 121928267 chr5 121696031 TRA NORMAL
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 121690120 121696031 3.344784 DUP NA
chr5 121696032 121928267 4.443324 DUP NA
chr5 121928268 121928366 4.646916 DUP NA
chr5 121928367 127600012 2.200120 TCNneutral;LOH NA
chr5 83630059 121690120 2.200120 TCNneutral;LOH NA
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121488951 T C
chr5 122830992 A G
chr5 121927115 G GTATGTT
chr5 121927186 TG T
chr5 121927931 GAAACTAGTAATA G
chr5 121927953 AT A
chr5 122910363 T TA

ICGC_MB65SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB65 group_4 0.12 0 0 0 NA NA NA FALSE FALSE NA FALSE NA ref_filtered 0.5092798 FALSE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 2 2 2 2
CNAs 0 0 0 0
somatic SNVs/InDels 1 0 0 1
relevant somatic SNVs/InDels 0 0 - -
all Mutations 3 2 - 3
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 121468010 chr5 121468201 INV INV
chr5 121865362 chr5 121865576 INV INV
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 121983104 T TTA

ICGC_MB70SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB70 group_4 0.35 1 1 0 0.00197094246029321 0.5 diploid 0.0019709 0.5 0.0500127 FALSE FALSE FALSE FALSE TRUE ref_filtered 0.0818522 FALSE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 2 2 2 2
CNAs 0 0 0 0
somatic SNVs/InDels 1 0 0 1
relevant somatic SNVs/InDels 0 0 - -
all Mutations 3 2 - 3
SVs
sv_break1_chrom sv_break1_pos sv_break2_chrom sv_break2_pos sv_type eventInversion
chr5 122710629 chr8 140796961 TRA INV
chr2 145148080 chr5 122710801 TRA INV
Somatic SNVs
snv_chrom snv_pos ref alt
chr5 122296788 A G

ICGC_MB71SVs/CNAs

IGV
General
sample_id subgroup FPKM n_markers n_ASE_markers n_cnv_markers p_all delta_abs_all copynumber_tag_all combined_p_value mean_delta_abs ABH ASE_marker_run_overlap passed_FPKM_filter passed_ASE_filter ASE_filter_rescued_oncogene passed_mean_delta_abs_filter OHE_used_reference OHE_used_pvalue passed_OHE_filter cis_activated_gene
ICGC_MB71 group_4 0.06 0 0 0 NA NA NA FALSE FALSE NA FALSE NA ref_filtered 0.6563711 FALSE FALSE
Mutation Counts
Variant Type n matched via gene TAD n matched via GeneHancer n affecting ChIPSeq total
SVs 0 0 0 0
CNAs 2 2 2 2
somatic SNVs/InDels 0 0 0 0
relevant somatic SNVs/InDels 0 0 - -
all Mutations 2 2 - 2
CNAs
cna_chrom cna_start cna_end copy_number CNA_type log2
chr5 122520006 129969957 2.982474 DUP NA
chr5 70750153 122520006 2.975594 DUP NA